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DRL / blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
GNU General Public License v3.0
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ambiguous bamfilter option #100

Closed katieemelianova closed 3 years ago

katieemelianova commented 4 years ago

The -U (--exclude_unmapped) option in the bamfilter module is described as "Include pairs where both reads are unmapped" in the -h.

Does this include or exclude unmapped reads?

DRL commented 3 years ago

It does exclude them. Well spotted. Will fix