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DRL / blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
GNU General Public License v3.0
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matplotlib future warning #20

Closed JohnUrban closed 8 years ago

JohnUrban commented 8 years ago

Hi,

Thanks for the great set of tools.

I just started using blobtools, but I have seen this message twice when doing blobtools blobplot:

/users/jurban/software/localpy/lib/python2.7/site-packages/matplotlib-1.4.3-py2.7-linux-x86_64.egg/matplotlib/collections.py:590: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison
  if self._edgecolors == str('face'):

Not sure if it is affecting anything, but thought I'd pass it along.

best,

John

JohnUrban commented 8 years ago

Let me try matplotlib 1.5 - before continuing with this thread.

JohnUrban commented 8 years ago

I think that did the trick, though I got another message:

UserWarning: Matplotlib is building the font cache using fc-list. This may take a moment.
  warnings.warn('Matplotlib is building the font cache using fc-list. This may take a moment.')
DRL commented 8 years ago

Hi JohnUrban, yes, correct. blobtools needs matplotlib1.5.

the thing about the fonts is that matplotlib has to generate them the first time it wants to use them.

you can find more info here

cheers,

dom