blobplot with very small 'blobs'

DRL / blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

GNU General Public License v3.0

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blobplot with very small 'blobs' #42

Closed pbfrandsen closed 7 years ago

pbfrandsen commented 7 years ago

Hello,

Thanks for creating such a nice tool. I am running blobtools on a new genome and for some reason the blobplot is outputting blobs that are quite small, leaving a lot of blank space in the coverage x GC proportion plot. Any idea what might be causing this? Or what I might do to fix it? I had run it on the same data a few months ago and didn't have this issue. Any insight would be great.

blobdb json bestsum phylum p7 span 100 blobplot cov0

pbfrandsen commented 7 years ago

A quick update on this. After I posted this, I noticed that the coverage was suspiciously low for each of these so I remade the blobplot, this time with a coverage file rather than the raw sam file (which is what I think I used the last time that I used blobtools a few months ago). I think that was my mistake. All is good.

Thanks,

Paul