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DRL / blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
GNU General Public License v3.0
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Python AttributeError AxesSubplot object has no attribute 'set_color' #79

Closed AntoineHo closed 5 years ago

AntoineHo commented 6 years ago

Hello, I have run into this issue after doing the following command: $ blobtools plot -i test.blobDB.json -o test.plot

[+] Reading BlobDB test.blobDB.json
[+]     Loading BlobDB into memory ...
[+]     Deserialising BlobDB (using 'ujson' module) (this may take a while) ...
[+]     Finished in 9.93609285355s
[+] Extracting data for plots ...
[I] Chordata : sequences = 3,610, span = 58.84 MB, N50 = 42,376 nt
[I] Arthropoda : sequences = 3,934, span = 50.75 MB, N50 = 35,510 nt
[I] Proteobacteria : sequences = 3,100, span = 46.84 MB, N50 = 49,863 nt
[I] Rotifera : sequences = 4,041, span = 30.44 MB, N50 = 20,021 nt
[I] no-hit : sequences = 26,298, span = 26.97 MB, N50 = 1,527 nt
[I] Mollusca : sequences = 1,253, span = 21.44 MB, N50 = 43,704 nt
[I] Ascomycota : sequences = 677, span = 11.65 MB, N50 = 36,332 nt
[I] other : sequences = 5,221, span = 58.34 MB, N50 = 30,949 nt
[+] Plotting test.plot.test.blobDB.json.bestsum.phylum.p7.span.100.blobplot.bam0.png
Traceback (most recent call last):
  File "/home/antoine/tools/blobtools/lib/blobplot.py", line 183, in <module>
    main()
  File "/home/antoine/tools/blobtools/lib/blobplot.py", line 179, in main
    plotObj.plotBar(cov_lib, out_f)
  File "/home/antoine/tools/blobtools/lib/BtPlot.py", line 546, in plotBar
    fig, ax_main, ax_group, x_pos_main, x_pos_group = self.setupPlot('readcov')
  File "/home/antoine/tools/blobtools/lib/BtPlot.py", line 525, in setupPlot
    ax_main.set_color(BGGREY)
AttributeError: 'AxesSubplot' object has no attribute 'set_color'
DRL commented 5 years ago

Most likely related to matplotlib version. New release should address this.

cheers,

dom