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DRL / blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
GNU General Public License v3.0
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refine nodesDB handling and writing of default db #82

Closed douglasgscofield closed 5 years ago

douglasgscofield commented 5 years ago

We have blobtools installed in a cluster environment, where creation of the default taxonomy db is possible during installation by someone with sufficient permissions, but not by users loading blobtools as a module. There is also no facility for creating a taxonomy db in some location other than the default, although it is possible to load a taxonomy db from another location with --db.

This pull request modified blobtools create a bit to allow creation of a taxonomy db when --nodes, --names, and --db are all specified and the taxonomy db named by --db does not exist. In that case, there is no attempt to create the default database, only the named database.

DRL commented 5 years ago

Hi douglasgscofield,

thanks for these changes!

cheers,

dom