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DRL / blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
GNU General Public License v3.0
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taxify MemoryError #89

Closed Yulia-Yakovleva closed 4 years ago

Yulia-Yakovleva commented 5 years ago

Hi, I have an issue with taxify command. taxify -h is ok, but when I want to generate HITS file, I see this: [+] Parsing Mapping file /db/nucl_wgs.accession2taxid Traceback (most recent call last): File "/home/yulia/blobtools/lib/taxify.py", line 112, in main() File "/home/yulia/blobtools/lib/taxify.py", line 83, in main taxid_d = BtIO.parseDict(map_f, map_col_sseqid, map_col_taxid) File "/home/yulia/miniconda3/lib/python2.7/site-packages/lib/BtIO.py", line 109, in parseDict items[temp[k_idx]] = temp[v_idx] MemoryError

I thougt, it could be a proplem with python 2 and 3 conflict, I've reinstalled all what is possible, but still have the same issue. It is okey with help calling, what can be wrong? Thanks!

DRL commented 4 years ago

Not seen that before. Try using python3 and the latest release of blobtools