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DRL / blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
GNU General Public License v3.0
192 stars 44 forks source link

Pysam installation failure with conda environment #98

Open wallacelab opened 4 years ago

wallacelab commented 4 years ago

Following the Conda environment installation instructions on the readme, I hit the following error after running conda install -c bioconda pysam --update-deps:

Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: - 
Found conflicts! Looking for incompatible packages.

Followed by a long series of Python errors, but all apparently tracing to the "incompatible packages". As a workaround, I just did "pip install pysam --user", and it worked fine, but wanted to pass along that the Conda instructions may need to be tweaked.

sjfleck commented 4 years ago

Thank you for this fix! I didn't notice it before leaving my own comment about the exact same issue.

shangl02 commented 2 years ago

This is issue solved? I still run into the same error