DRL kinfin issues - Githubissues

DRL / kinfin

Taxon-aware analysis of clustered protein sequences

https://kinfin.readme.io

GNU General Public License v3.0

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issues

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What is the file corresponding to [orthofinder] in the 'generate_kinfin_input.py' script?

#52 PleniumJS opened 2 months ago
0
Added a basic endpoint to initialize user's session

#51 rohan-b-84 closed 4 months ago
0
Bump scipy from 0.19.0 to 1.11.1

#50 dependabot[bot] closed 6 months ago
0
plot_cluster_size and generate_network .py errors

#49 aebaci opened 7 months ago
3
Error in iprs2table.py

#48 aebaci closed 7 months ago
9
Python3 fixes and linting

#47 DRL closed 7 months ago
0
Error in sanitise proteins step

#46 aebaci closed 7 months ago
4
Python3

#45 DRL closed 2 years ago
0
installation and running error

#44 glmaala closed 2 years ago
1
Protein | in clustering belongs to proteomes that are not present in the SpeciesClassification-file

#43 Rob-murphys closed 3 years ago
1
Installation error: No module named 'pip.req'

#42 starise-wg closed 2 years ago
2
Need to explicitly import stats from scipy

#41 mbarkdull opened 4 years ago
1
Installation error: No module named 'pip.req'

#40 ggavelis closed 2 years ago
2
meet problem on "no attribute '__getitem__'"

#39 JohnnyChen1113 opened 5 years ago
1
can't run kinfin

#38 pnatsi closed 2 years ago
2
I have a problen to run Kinfin

#37 icruz1989 closed 2 years ago
4
plot_cluster_size_distribution.py

#36 Yixiangzhang1996 opened 5 years ago
1
Error writing output files

#35 stephenrdoyle closed 5 years ago
1
install error

#34 jas1717 closed 6 years ago
0
generate_network.py error

#33 agcmartins opened 6 years ago
2
Config File with TAXID or other labels

#32 agcmartins closed 2 years ago
3
interproscan.sh can not work!!!

#31 yuzhenpeng closed 2 years ago
4
Cope with colon in domain identifier

#30 BioJNO closed 2 years ago
0
get_count_matrix error

#29 evolgenomology closed 6 years ago
4
20801 Killed

#28 evolgenomology closed 6 years ago
1
functional_annotation_of_clusters.py ValueError

#27 martbrob closed 2 years ago
1
generate_kinfin_input.py doesn't recognise .fa

#26 lstevens17 closed 7 years ago
2
enrichment/depletion of one TAXON against all other TAXON

#25 wdermauw closed 6 years ago
1
Can't produce the SequenceIDs file

#24 dcopetti closed 7 years ago
3
generate_network.py

#23 clydeandforth closed 7 years ago
3
filter_fastas_before_clustering.py

#22 clydeandforth closed 7 years ago
2
functional_annotation

#21 BenjaminSchwessinger closed 7 years ago
3
get_count_matrix.py

#20 duncanberger closed 7 years ago
1
Image for README

#19 DRL closed 7 years ago
0
fix for installation script

#18 DRL closed 7 years ago
0
Features

#17 DRL closed 7 years ago
0
Features

#16 DRL closed 7 years ago
0
Proteins in clustering belong to proteomes

#15 evolgenomology closed 7 years ago
1
Trinity headers causing hickup

#14 evolgenomology closed 7 years ago
0
no output when setting -t

#13 evolgenomology closed 7 years ago
9
structure of SpeciesClassification.txt

#12 evolgenomology closed 7 years ago
4
Added new domain feature

#11 DRL closed 7 years ago
0
Bug related to tree rooting

#10 DRL closed 7 years ago
0
Fixed bug related to rooting tree

#9 DRL closed 7 years ago
0
Fixed bug related to not printing ALO_metrics

#8 DRL closed 7 years ago
0
Simplify tree analysis

#7 DRL closed 7 years ago
0
Fixed bug to lack of domains

#6 DRL closed 7 years ago
0
fixed speciesID assigned for missing proteomes

#5 DRL closed 7 years ago
0
Tree node feature

#4 DRL closed 7 years ago
0
Kinfin release

#3 DRL closed 7 years ago
0