Dear all,
I have been trying to used Admixtools to calculate fstatistics between several individuals. I have two questions concerning the runs:
1) can I calculate the fstats for species instead of individuals? DO I set it up in the .ind file, changing the POP column for each species name?
2) I am using capture sequence data and the reference used to map the reads is a set of contigs, so when I try to run the analysis I get this error:
_fatalx:
bad chrom: 625mc1r
Aborted
Is there any option I can use to accept the different "chromosome" names I have in my files?
Dear all, I have been trying to used Admixtools to calculate fstatistics between several individuals. I have two questions concerning the runs: 1) can I calculate the fstats for species instead of individuals? DO I set it up in the .ind file, changing the POP column for each species name? 2) I am using capture sequence data and the reference used to map the reads is a set of contigs, so when I try to run the analysis I get this error: _fatalx: bad chrom: 625mc1r Aborted Is there any option I can use to accept the different "chromosome" names I have in my files?
Thanks in advance!