bumblenick
commented
7 years ago It does no real harm but your top line starting parameter... should not be there
N
On Wed, Nov 8, 2017 at 6:40 AM, kafka2184 notifications@github.com wrote:
Hello, I've got a problem in my parameter, in the log output file it begin by "warning: dubious parameter" I can't find where is the problem. I got the result at the end for qp3pop, but don't know if it's serious problem this warning. Maybe someone can help....
the parfile : parameter file: parqp3 DIR: /home/mferrand/ SSS: ALL genotypename: /home/mferrand/ALL.geno snpname: /home/mferrand/ALL.snp indivname: /home/mferrand/ALL.ind popfilename: /home/mferrand/list_qp3test.txt
I have my 3 files in the good format (I hope) ALL.geno 1000000 1000000 0001000 etc...
ALL.snp N-0001 1 0.31 10015031 N-0002 1 0.31 10039272 N-0003 1 0.31 10048150 etc...
ALL.ind "N9" "0" "N9" "N5" "0" "N5" "D1" "0" "D1" "T1" "0" "T1" "D22" "0" "D22" "N1" "0" "N1" "Col0" "0" "Col0"
the popfilename: list_qp3test.txt : "T1" "N1" "D1" "D22" "N9" "D1" "N1" "N9" "D1" etc...
then the logfile give = parameter file: parqp3.txt **warning: dubious parameter, please check the parameter name parameter THE INPUT PARAMETERS
PARAMETER NAME: VALUE
parameter file: parqp3Pop DIR: /home/mferrand/ SSS: ALL genotypename: /home/mferrand/ALL.geno snpname: /home/mferrand/ALL.snp indivname: /home/mferrand/ALL.ind popfilename: /home/mferrand/list_qp3test.txt qp3Pop version: 204
nplist: 56 number of blocks for block jackknife: 68 snps: 54984 Source 1 Source 2 Target f_3 std. err Z SNPs result: "T1" "N1" "D1" -0.196412 0.015795 -12.435 29533 result: "D22" "N9" "D1" -0.234678 0.008221 -28.547 26423 result: "N1" "N9" "D1" -0.196241 0.018510 -10.602 29550 Etc...
Thanks in advance !
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kafka2184
Hello, I've got a problem in my parameter, in the log output file it begin by "warning: dubious parameter" I can't find where is the problem. I got the result at the end for qp3pop, but don't know if it's serious problem this warning. Maybe someone can help....
the parfile : parameter file: parqp3 DIR: /home/mferrand/ SSS: ALL genotypename: /home/mferrand/ALL.geno snpname: /home/mferrand/ALL.snp indivname: /home/mferrand/ALL.ind popfilename: /home/mferrand/list_qp3test.txt
I have my 3 files in the good format (I hope) ALL.geno 1000000 1000000 0001000 etc...
ALL.snp N-0001 1 0.31 10015031 N-0002 1 0.31 10039272 N-0003 1 0.31 10048150 etc...
ALL.ind "N9" "0" "N9" "N5" "0" "N5" "D1" "0" "D1" "T1" "0" "T1" "D22" "0" "D22" "N1" "0" "N1" "Col0" "0" "Col0"
the popfilename: list_qp3test.txt : "T1" "N1" "D1"
"D22" "N9" "D1" "N1" "N9" "D1"
etc...
then the logfile give = parameter file: parqp3.txt **warning: dubious parameter, please check the parameter name parameter THE INPUT PARAMETERS PARAMETER NAME: VALUE parameter file: parqp3Pop DIR: /home/mferrand/ SSS: ALL genotypename: /home/mferrand/ALL.geno snpname: /home/mferrand/ALL.snp indivname: /home/mferrand/ALL.ind popfilename: /home/mferrand/list_qp3test.txt qp3Pop version: 204 nplist: 56 number of blocks for block jackknife: 68 snps: 54984
Source 1 Source 2 Target f_3 std. err Z SNPs result: "T1" "N1" "D1" -0.196412 0.015795 -12.435 29533 result: "D22" "N9" "D1" -0.234678 0.008221 -28.547 26423 result: "N1" "N9" "D1" -0.196241 0.018510 -10.602 29550 Etc...
Thanks in advance !