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DReichLab / AdmixTools

Tools test whether admixture occurred and more
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Issue with qpDstat #37

Open Aljumiliy1 opened 6 years ago

Aljumiliy1 commented 6 years ago

Hi All,

I have problem running qpDstat.

I am using this ((/home/apps/AdmixTools-master/bin/qpDstat -p parfile.par [-l lo] [-h hi] > GenomeD2)) in my terminal and after a while the run terminates. I cannot see any error except the word (killed).

I have done it for several times but still get the same word and the output file showing only the parameters I have used which you can see below:

/home/apps/AdmixTools-master/bin/qpDstat: parameter file: parfile.par

THE INPUT PARAMETERS

PARAMETER NAME: VALUE

genotypename: /home/foo/ABBA-BABA/GenomeD.ped.eigenstratgeno snpname: /home/foo/ABBA-BABA/GenomeD.ped.snp indivname: /home/foo/ABBA-BABA/GenomeD.ped.ind poplistname: /home/foo/ABBA-BABA/pop_list

qpDstat version: 711

Any kind of help will be appreciated,

Thanks,

Ahmed

bumblenick commented 6 years ago

Most likely you are running out of memory or CPU time and your system kills the job

Nick

Sent from my iPhone

On Apr 18, 2018, at 6:23 AM, Ahmed Al-Jumaili notifications@github.com wrote:

Hi All,

I have problem running qpDstat.

I am using this ((/home/apps/AdmixTools-master/bin/qpDstat -p parfile.par [-l lo] [-h hi] > GenomeD2)) in my terminal and after a while the run terminates. I cannot see any error except the word (killed).

I have done it for several times but still get the same word and the output file showing only the parameters I have used which you can see below:

/home/apps/AdmixTools-master/bin/qpDstat: parameter file: parfile.par

THE INPUT PARAMETERS

PARAMETER NAME: VALUE

genotypename: /home/foo/ABBA-BABA/GenomeD.ped.eigenstratgeno snpname: /home/foo/ABBA-BABA/GenomeD.ped.snp indivname: /home/foo/ABBA-BABA/GenomeD.ped.ind poplistname: /home/foo/ABBA-BABA/pop_list

qpDstat version: 711

Any kind of help will be appreciated,

Thanks,

Ahmed

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Aljumiliy1 commented 6 years ago

Thanks Nick. I ll check about my system.

Ahmed

bumblenick commented 6 years ago

Try a small job to see if it works

N

Sent from my iPhone

On Apr 18, 2018, at 7:23 AM, Ahmed Al-Jumaili notifications@github.com wrote:

Thanks Nick. I ll check about my system.

Ahmed

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