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DReichLab / AdmixTools

Tools test whether admixture occurred and more
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fatalx: (ineigenstrat) too many lines in file #60

Open syauwjl opened 4 years ago

syauwjl commented 4 years ago

qpDstat version: 900

Rsa.snp.snp.chr_change: genetic distance set from physical distance fatalx: (ineigenstrat) too many lines in file 13865661 13865661

what wrong with that? Thanks!

bumblenick commented 4 years ago

1) The number of data lines in your .geno file exceeds the number of snps. Obviously this is an error. Please check this using wc 2) If this is human data, 13M snps is probably excessive for your purposes. After sorting out problem 1, try downsampling by a factor of at least 10. [convertf will do that for you]

Nick

On Sat, Mar 14, 2020 at 4:43 AM syauwjl notifications@github.com wrote:

qpDstat version: 900

Rsa.snp.snp.chr_change: genetic distance set from physical distance fatalx: (ineigenstrat) too many lines in file 13865661 13865661

what wrong with that? Thanks!

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syauwjl commented 4 years ago

Thanks for the quick answer. Yes, the number of data lines in my .geno file exceeds the number of snps.