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DReichLab / AdmixTools

Tools test whether admixture occurred and more
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fatalx: No samples: #61

Open syauwjl opened 4 years ago

syauwjl commented 4 years ago

THE INPUT PARAMETERS

PARAMETER NAME: VALUE

genotypename: Rsa.geno

snpname: Rsa.snp.chr_change

indivname: Rsa.ind

popfilename: popfilers

f4mode: YES

qpDstat version: 900

Rsa.snp.chr_change: genetic distance set from physical distance number of quadruples 120 fatalx: No samples: Bra

################################# part of my popfile Bra RS01 RS02 RS03 Bra RS01 RS02 RS04 Bra RS01 RS02 RS05 Bra RS01 RS02 RS06 Bra RS01 RS02 RS07 Bra RS01 RS02 RS08 Bra RS01 RS02 RS09 Bra RS01 RS02 RS10 Bra RS01 RS03 RS04 Bra RS01 RS03 RS05 Bra RS01 RS03 RS06 Bra RS01 RS03 RS07 Bra RS01 RS03 RS08 ################################# part of my popfile my indiv file: Bra U POP1 RS01 U POP2 RS02 U POP3 RS03 U POP4 RS04 U POP5 RS05 U POP6 RS06 U POP7 RS07 U POP8 RS08 U POP9 RS09 U POP10 RS10 U POP11

Thanks!

bumblenick commented 4 years ago

qpDstat runs on populations not samples. Bra is not a population but a sample.

I think if you had looked carefully at an example you could have caught this.

Nick

On Sat, Mar 14, 2020 at 9:36 PM syauwjl notifications@github.com wrote:

THE INPUT PARAMETERS

PARAMETER NAME: VALUE

genotypename: Rsa.geno

snpname: Rsa.snp.chr_change

indivname: Rsa.ind

popfilename: popfilers

f4mode: YES qpDstat version: 900

Rsa.snp.chr_change: genetic distance set from physical distance number of quadruples 120 fatalx: No samples: Bra

################################# part of my popfile Bra RS01 RS02 RS03 Bra RS01 RS02 RS04 Bra RS01 RS02 RS05 Bra RS01 RS02 RS06 Bra RS01 RS02 RS07 Bra RS01 RS02 RS08 Bra RS01 RS02 RS09 Bra RS01 RS02 RS10 Bra RS01 RS03 RS04 Bra RS01 RS03 RS05 Bra RS01 RS03 RS06 Bra RS01 RS03 RS07 Bra RS01 RS03 RS08 ################################# part of my popfile my indiv file: Bra U POP1 RS01 U POP2 RS02 U POP3 RS03 U POP4 RS04 U POP5 RS05 U POP6 RS06 U POP7 RS07 U POP8 RS08 U POP9 RS09 U POP10 RS10 U POP11

Thanks!

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