Dear Nick,
I am trying to run qpDstat using the v44.3_HO_public database merged with my population of interest "Pop", with input files in EIGENSTRAT format (I also tried PACKEDANCESTRYMAP format). Some 20 minutes after running the following command:
Pop Ancestor.REF Papuan.DG Mbuti.DG
Pop Ancestor.REF Australian.DG Mbuti.DG
Pop Href.REF Papuan.DG Mbuti.DG
Pop Href.REF Australian.DG Mbuti.DG
Pop Piapoco.DG Papuan.DG Mbuti.DG
Pop Piapoco.DG Australian.DG Mbuti.DG
Pop Quechua.DG Papuan.DG Mbuti.DG
I really don't know why I am not getting any D-statistics results.
Please help !
Thanks a lot
Dear Nick, I am trying to run qpDstat using the v44.3_HO_public database merged with my population of interest "Pop", with input files in EIGENSTRAT format (I also tried PACKEDANCESTRYMAP format). Some 20 minutes after running the following command:
qpDstat -p parfile_mbuti_x_pop1_pop2.txt [-l Mbuti.SDG] [-h Quechua.DG] > test1.log
the process gets killed and I get this log info (test1.log):
However, no D-statistics test ever gets computed.
Everything seems to be fine with the input files (here I only provide a few lines):
genotypename: v44.3_HO_public_mergeit_pop.geno:
snpname: v44.3_HO_public_mergeit_pop.snp:
indivname: v44.3_HO_public_mergeit_pop.ind:
poplistname: uniq_pops_list_v44.3_1240K_public.txt:
popfilename: list_qpDstat1_mbuti_x_pop1_pop2.txt:
I really don't know why I am not getting any D-statistics results. Please help ! Thanks a lot