DS4B-ANU / genome_size_in_plants

Figuring out why some plants have big genomes, and some have small genomes
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papers #1

Open DS4B-ANU opened 2 months ago

DS4B-ANU commented 2 months ago

Add papers about plant genome size as responses to this issue!

DS4B-ANU commented 2 months ago

Plant Genome Size Research: A Field In Focus M. D. BENNETT, I. J. LEITCH Annals of Botany, Volume 95, Issue 1, January 2005, Pages 1–6, https://doi.org/10.1093/aob/mci001

https://academic.oup.com/aob/article/95/1/1/198410

DS4B-ANU commented 2 months ago

Environmental pressures on stomatal size may drive plant genome size evolution: evidence from a natural experiment with Cape geophytes Pavel Veselý, Petr Šmarda, Petr Bureš, Charles Stirton, A Muthama Muasya, Ladislav Mucina, Lucie Horová, Kristýna Veselá, Alexandra Šilerová, Jakub Šmerda ... Show more Annals of Botany, Volume 126, Issue 2, 1 August 2020, Pages 323–330, https://doi.org/10.1093/aob/mcaa095

L-Thai commented 2 months ago

Evolution of plant genome architecture Wendel, J.F., Jackson, S.A., Meyers, B.C. et al. Evolution of plant genome architecture. Genome Biol 17, 37 (2016). https://doi.org/10.1186/s13059-016-0908-1

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change Hu, T., Pattyn, P., Bakker, E. et al. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat Genet 43, 476–481 (2011). https://doi.org/10.1038/ng.807

Sophia83104 commented 2 months ago

Estimation of Nuclear DNA Content and Determination of Relationship Between Altitude and Genome Size of USDA Turkish Oat (Avena spp.) Collection

AYDIN, A.,M., ŞAKIROĞLU MUHAMMET and METIN, T., 2018. Estimation of Nuclear DNA Content and Determination of Relationship Between Altitude and Genome Size of USDA Turkish Oat (Avena spp.) Collection. Gesunde Pflanzen, 70(4), pp. 171-178.

https://www.proquest.com/docview/2419937979?parentSessionId=8fzdXQK2me7GfH4imfby1O3sOKdjbJFzInpxaLpe3sI%3D&pq-origsite=primo&accountid=8330&sourcetype=Scholarly%20Journals

Lizhaozhe123 commented 2 months ago

Pellicer, J., Hidalgo, O., Dodsworth, S., & Leitch, I. J. (2018). Genome size diversity and its impact on the evolution of land plants. Genes, 9(2), 88. https://www.mdpi.com/2073-4425/9/2/88

Sophia83104 commented 2 months ago

URSA Exploring environmental selection on genome size in angiosperms

https://www.cell.com/trends/plant-science/fulltext/S1360-1385(21)00143-6?dgcid=raven_jbs_etoc_email#secst0055

Sophia83104 commented 2 months ago

Testing the large genome constraint hypothesis: plant traits, habitat and climate seasonality in Liliacea https://www-jstor-org.virtual.anu.edu.au/stable/newphytologist.210.2.709

Mengdi7 commented 2 months ago

Genome Size Variation and Evolution Driven by Transposable Elements in the Genus Oryza

Volume 13 - 2022 | https://doi.org/10.3389/fpls.2022.921937

Sophia83104 commented 2 months ago

URSA Plant genome size modulates grassland community responses to multi-nutrient additions https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.18496

nickboffa commented 2 months ago

Stomatal vs. genome size in angiosperms: the somatic tail wagging the genomic dog? https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2850795/

Bigger stomatal size -> bigger genome size (whether this accounts for ploidy though idk)

DS4B-ANU commented 2 months ago

Genome size is a strong predictor of cell size and stomatal density in angiosperms Jeremy M. Beaulieu, Ilia J. Leitch, Sunil Patel, Arjun Pendharkar, Charles A. Knight First published: 06 August 2008 https://doi.org/10.1111/j.1469-8137.2008.02528.x Citations: 360

Sophia83104 commented 2 months ago

Estimation of Nuclear DNA Content and Determination of Relationship Between Altitude and Genome Size of USDA Turkish Oat (Avena spp.) Collection

AYDIN, A.,M., ŞAKIROĞLU MUHAMMET and METIN, T., 2018. Estimation of Nuclear DNA Content and Determination of Relationship Between Altitude and Genome Size of USDA Turkish Oat (Avena spp.) Collection. Gesunde Pflanzen, 70(4), pp. 171-178.

https://www.proquest.com/docview/2419937979?parentSessionId=8fzdXQK2me7GfH4imfby1O3sOKdjbJFzInpxaLpe3sI%3D&pq-origsite=primo&accountid=8330&sourcetype=Scholarly%20Journals

NOTES Papers can say their findings are important - scrolling further they show a scatter plot

Sophia83104 commented 2 months ago

Genome size is a strong predictor of cell size and stomatal density in angiosperms Jeremy M. Beaulieu, Ilia J. Leitch, Sunil Patel, Arjun Pendharkar, Charles A. Knight First published: 06 August 2008 https://doi.org/10.1111/j.1469-8137.2008.02528.x Citations: 360

NOTES _ significance and effect size assumed