DaanJG98
commented
6 years ago Dockerfile:
- install miniconda
$ wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh $ bash Miniconda3-latest-Linux-x86_64.sh - create environment
$ conda env create --name snakemake-tutorial --file environment.yaml - activate environment
$ source activate snakemake-tutorial
User:
- Add id_file to data directory
- Execute snakemake in docker container
docker exec {snakemake_container} snakemake
https://github.com/nickjstevens/analysis-workflow/blob/master/Snakefile https://bitbucket.org/snakemake/snakemake/src/ecd26cd06ca7?at=master