DaehwanKimLab / centrifuge

Classifier for metagenomic sequences
GNU General Public License v3.0
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centrifuge-build seems to ignore --kmer-count flag #147

Open dshivak opened 5 years ago

dshivak commented 5 years ago

Running:

for KMER in 15 20 25 30; do centrifuge-build --kmer-count $KMER --conversion-table example.conv --name-table example.name --taxonomy-tree example.tree example.fa foo.$KMER; done

results in groups of .cf index files that are binary duplicates. --kmer-count seems to be ignored.

This is using centrifuge-build-bin version 1.0.4, pulled/compiled today.