--sample-sheet file - Githubissues

DaehwanKimLab / centrifuge

Classifier for metagenomic sequences

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--sample-sheet file #154

Closed juulluu21 closed 5 years ago

juulluu21 commented 5 years ago

Hi,

Can I have an example of --sample-sheet file for paired end reads?

Thanks.

mourisl commented 5 years ago

Each line corresponds to one sample. And more paired-end reads samples, it can be like: 2 sample_1_r1.fq sample_1_r2.fq sample_1.classification sample_1.report 2 sample_2_r1.fq sample_2_r2.fq sample_2.classification sample_2.report 2 sample_3_r1.fq sample_3_r2.fq sample_3.classification sample_3.report ...

juulluu21 commented 5 years ago

Oh! Thank you!!