Assembly illumina & nanopore data warnings

[BurinkiWU]

I use the following command to assembly my illumina data with nanopore, but there are a warning showing below. My command: nohup ~/tools/SPAdes-3.13.0-Linux/bin/metaspades.py -1 ~/data/seameta_illumina/seameta_9_illu/seameta_9/seameta-9_illu_1.fq -2 ~/data/seameta_illumina/seameta_9_illu/seameta_9/seameta-9_illu_2.fq --nanopore ../seameta_9_1kb+.fa -t 70 -o ./ &

=== Error correction and assembling warnings:

• 4:21:53.059 66G / 163G WARN ScaffoldingUniqueEdgeAna (scaff_supplementary.cpp : 59) Less than half of genome in unique edges! ======= Warnings saved to /home/wzq/data/seawater_meta_9/workspace/hybrid_raw/warnings.log

what is the warning meaning for? what is the "59) Less than half of genome in unique edges!"? How to explain it?

[themouldinator]

Not entirely sure you're in the right place here I'd suggest reposting on biostars or stack exchange or stack overflow this also may help; https://github.com/ablab/spades/issues/78