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DaehwanKimLab / centrifuge

Classifier for metagenomic sequences
GNU General Public License v3.0
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--sample-sheet example #182

Closed themouldinator closed 4 years ago

themouldinator commented 4 years ago

Hi

Please could you give an example of the --sample-sheet i cant work out how to format the .tsv file for single end reads

Kind regards

Gus

mourisl commented 4 years ago

I've replied that in the pull request where you asked. Maybe you missed that. It is "For single-end sample you can use: 1 sample_read.fq.gz xxxx sample_classification.out sample_report.out

xxx is some randomly string, Centrifuge will ignore that in single-end sample case. The space between columns should be "tab" in the sheet since the format is tsv. Does this help?"

themouldinator commented 4 years ago

Hi Li

Hope you are doing well and having a great start to the new year. Thanks so much for clarifying that for me, I really appreciate it.

Kind regards

Gus

On Tue, 7 Jan 2020 at 20:28, Li Song notifications@github.com wrote:

Closed #182 https://github.com/DaehwanKimLab/centrifuge/issues/182.

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