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DaehwanKimLab / centrifuge

Classifier for metagenomic sequences
GNU General Public License v3.0
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Error in centrifuge #203

Closed akhalil2 closed 3 years ago

akhalil2 commented 3 years ago

Hallo I am trying to install centrifuge and i get error (ERR): centrifuge-class exited with value 1.. and when i build the indices and try my analysis i get Expected centrifuge to be in same directory with centrifuge-class)

mourisl commented 3 years ago

What was your command for running Centrifuge?

akhalil2 commented 3 years ago

Sudo apt-get install centrifuge

On Thu 26. Nov 2020 at 17:48, Li Song notifications@github.com wrote:

What was your command for running Centrifuge?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/DaehwanKimLab/centrifuge/issues/203#issuecomment-734401344, or unsubscribe https://github.com/notifications/unsubscribe-auth/AR3WSJEPLOBLEPRCZBBZW63SR2BEXANCNFSM4UDSLKGA .

mourisl commented 3 years ago

Could you please use "which centrifuge" to find the install path of Centrifuge, and check whether centrifuge-class, centrifuge-build are in that folder?

akhalil2 commented 3 years ago

Centrifuge-build is here but class is not.

On Thu 26. Nov 2020 at 17:56, Li Song notifications@github.com wrote:

Could you please use "which centrifuge" to find the install path of Centrifuge, and check whether centrifuge-class, centrifuge-build are in that folder?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/DaehwanKimLab/centrifuge/issues/203#issuecomment-734404524, or unsubscribe https://github.com/notifications/unsubscribe-auth/AR3WSJGKST37WUC57WH2QADSR2CEDANCNFSM4UDSLKGA .

mourisl commented 3 years ago

You may try the github version, just git clone or download through the packages, then run "make". It should generate the centrifuge-class, -build files. And then you can run centrifuge from the "make" path.

akhalil2 commented 3 years ago

iIt was my mistake. I had a typo in the command so it didn't work well ..the other mistake I reinstalled centrifuge and wrote centrifuge without putting input so it gives me error .. thanks

‫في الخميس، 26 نوفمبر 2020 في 6:16 م تمت كتابة ما يلي بواسطة ‪Li Song‬‏ <‪ notifications@github.com‬‏>:‬

You may try the github version, just git clone or download through the packages, then run "make". It should generate the centrifuge-class, -build files. And then you can run centrifuge from the "make" path.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/DaehwanKimLab/centrifuge/issues/203#issuecomment-734412460, or unsubscribe https://github.com/notifications/unsubscribe-auth/AR3WSJAEUIA72F3LJD5UORDSR2EP7ANCNFSM4UDSLKGA .