Hi,
I encountered the downloading error as follows. it seems that soeme sequence fa file name is error.
`
(cfDNApipe) [wzhang@localhost ctf_test]$ centrifuge-download -o library -m -d "viral" refseq > seqid2taxid.mapDirectory library/viral exists. Continuing
Downloading ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/assembly_summary.txt ...
Progress : [##########------------------------------] 27% 2772/10050basename: extra operand ‘na’
Try 'basename --help' for more information.
Error downloading na /1034127 na _genomic.fna.gz!
Progress : [####################--------------------] 51% 5221/10050basename: extra operand ‘na’
Try 'basename --help' for more information.
Error downloading na /1897500 na _genomic.fna.gz!
Progress : [####################--------------------] 52% 5286/10050basename: extra operand ‘na’
Try 'basename --help' for more information.
Error downloading na /1912978 na _genomic.fna.gz!
Progress : [####################--------------------] 52% 5287/10050basename: extra operand ‘na’
Try 'basename --help' for more information.
`
I just ignored these missed files and build the genome reference.
Hope fix it asap.
Thanks!
Hi, I encountered the downloading error as follows. it seems that soeme sequence fa file name is error. ` (cfDNApipe) [wzhang@localhost ctf_test]$ centrifuge-download -o library -m -d "viral" refseq > seqid2taxid.mapDirectory library/viral exists. Continuing Downloading ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/assembly_summary.txt ... Progress : [##########------------------------------] 27% 2772/10050basename: extra operand ‘na’ Try 'basename --help' for more information.
Error downloading na /1034127 na _genomic.fna.gz! Progress : [####################--------------------] 51% 5221/10050basename: extra operand ‘na’ Try 'basename --help' for more information.
Error downloading na /1897500 na _genomic.fna.gz! Progress : [####################--------------------] 52% 5286/10050basename: extra operand ‘na’ Try 'basename --help' for more information.
Error downloading na /1912978 na _genomic.fna.gz! Progress : [####################--------------------] 52% 5287/10050basename: extra operand ‘na’ Try 'basename --help' for more information. ` I just ignored these missed files and build the genome reference. Hope fix it asap. Thanks!
Honchkrow