DaehwanKimLab / centrifuge

Classifier for metagenomic sequences
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make p+h+v Error downloading #211

Open MjelleLab opened 3 years ago

MjelleLab commented 3 years ago

I get the following error when downloading the databases:


(base) mh-ikom01:~/software/centrifuge/indices$ make p+h+v                                                                                                                        Making: p+h+v: p+h+v
make -f Makefile IDX_NAME=p+h+v
make[1]: Entering directory '/mnt/scratch/home/local/robinm/software/centrifuge/indices'
[[ -d tmp_p+h+v ]] && rm -rf tmp_p+h+v; mkdir -p tmp_p+h+v
Downloading and dust-masking viral
centrifuge-download -o tmp_p+h+v  -m -a "Any" -d "viral" -P 1 refseq > \
        tmp_p+h+v/all-viral-any_level.map
Downloading ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/viral/assembly_summary.txt ...
Progress : [##--------------------------------------] 7% 883/11618
Error downloading ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/611/645/GCF_001611645.5_ASM161164v5/GCF_001611645.5_ASM161164v5_genomic.fna.gz!
Progress : [###-------------------------------------] 8% 935/11618^CMakefile:255: recipe for target 'reference-sequences/all-viral-any_level.fna' failed