DaehwanKimLab / centrifuge

Classifier for metagenomic sequences
GNU General Public License v3.0
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Update the script to handle viral genome downloading #222

Closed mourisl closed 2 years ago

mourisl commented 2 years ago

Hi @fbreitwieser, is this update making sense? There has been several issues regarding the vial genome downloading, and #221 @mperisin-lallemand found that the current viral genome summary file does not have the issue you had many years back. I don't know what the original viral genome summary file look like, so I updated the code to output both columns if ftp is detected there. Would this be compatible if the format issue happens again? Thank you.