DaehwanKimLab / centrifuge

Classifier for metagenomic sequences
GNU General Public License v3.0
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Issue with centrifuge-download (dustmaster: command not found) #237

Closed lewhiteside closed 2 years ago

lewhiteside commented 2 years ago

Hi there,

I am trying to download archaeal, bacterial, fungal and viral genomes into a library using the following command:

centrifuge-download -o library -m -d "archaea,bacteria,viral,fungi" refseq > seqid2taxid.map

The library folders are being created in my centrifuge folder, along with the .fna files. However, the fna files are empty - and the following error appears

line28: dustmaster: command not found

This is my first time using linux so I am very new! Im not sure why this is coming up and I cant find any help online -

Could someone please point me in the right direction of what is going wrong? - and how I can fix this issue?

Any help would be greatly appreciated! Thanks in advance!

jsonProgram commented 2 years ago

you can install by conda, like :

conda install -c bioconda blast

jsonProgram commented 2 years ago

you can find dustmaster in your conda env

lewhiteside commented 2 years ago

Great thank you!