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DaehwanKimLab / centrifuge

Classifier for metagenomic sequences
GNU General Public License v3.0
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Error in centrifuge-download #239

Open csaucar opened 2 years ago

csaucar commented 2 years ago

Hello all!

While trying to building the index with the script provided in the manual: centrifuge-download -o taxonomy taxonomy centrigue-download -o library -m -d "bacteria" refseq > seqid2taxid.map

I obtained the following errors: ssh: could not resolve hostname hhtps: Temporary failure in name resolution rsync: connection unexpectedly closed (0 bytes received so far) [Receiver] resync error: error in rsync protocol data stream (code 12) at io.c(235) [Receive r:3.1.3]

Any ideas of what could I do? Thanks in advance! Carlos

mourisl commented 2 years ago

Can you see any files downloaded to the library file? Do you have wget or curl on your system?

csaucar commented 2 years ago

Hi,

There is a file called bacteria in the library file, in which there are two .txt (assembly_summary /_filtered). I do have curl, as I have already used it for other purposes. Thx