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DaehwanKimLab / centrifuge

Classifier for metagenomic sequences
GNU General Public License v3.0
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make p_compressed = "could not find jellyfish" #254

Closed DntBScrdDv closed 1 year ago

DntBScrdDv commented 1 year ago

Hi, I'm trying to use the make p-compressed function, but get the following error...

... Could not find Jellyfish.

real 0m0.074s user 0m0.010s sys 0m0.022s mv: cannot stat 'reference-sequences/all-compressed-archaea.fna.tmp.fa': No such file or directory make[1]: [Makefile:229: reference-sequences/all-compressed-archaea.fna] Error 1 make[1]: Leaving directory '/home/shep/centrifuge/indices' make: [Makefile:137: p_compressed] Error 2

Any idea what this means?

Thanks :)

DntBScrdDv commented 1 year ago

Apologies. I installed Jellyfish! Working fine now.