search

DaehwanKimLab / hisat-genotype

GNU General Public License v3.0
23 stars 15 forks source link

Python version #2

Closed amomin-pact closed 4 years ago

amomin-pact commented 4 years ago

Hi , I am trying to test hisatgenotype with the test data however I get the following error. Are the inderlying script of hisatgenotype only compatible with Python 2 versions? If so which?

Thanks Amin

hisat-genotype/hla-analysis$ hisatgenotype --base hla --locus-list A -1 ILMN/NA12892.extracted.1.fq.gz -2 ILMN/NA12892.extracted.2.fq.gz File "/home/ubuntu/projects/hisat-genotype/hisatgenotype", line 50 print 'Exception in '+func.name ^ SyntaxError: Missing parentheses in call to 'print'. Did you mean print('Exception in '+func.name)?

chbe-helix commented 4 years ago

Hi Amin,

Yes, HISATgenotype was built in Python 2.7. I'll be working on changing everything over to 3.7 in the coming months. Until then, please use python 2.7 with HISATgenotype.

Thanks, Chris

chbe-helix commented 4 years ago

HISATgenotype is being converted to Python 3 this week. We are running some tests and updating the documentation. This issue will be closed at this time