DaehwanKimLab / hisat-genotype

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Missing argument in genotyping_locus() #23

Closed nikolasthuesen closed 4 years ago

nikolasthuesen commented 4 years ago

https://github.com/DaehwanKimLab/hisat-genotype/blob/f348debae85ca89f5a975f9678515260661780cc/hisatgenotype#L634

args.ix_dir is missing in this list of arguments, leading to an error where debug_instr is not defined. debug_instr is defined, but since the arguments are provided in order and not as keyword arguments, the error message is "debug_instr" not provided. Maybe this can be part of release 1.3.2 as well?

chbe-helix commented 4 years ago

Hi Nicolas,

I have made the correction. Thanks for your patience!

Thanks, Chris

nikolasthuesen commented 4 years ago

Hi Chris

Thanks for the fast response and update.