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DaehwanKimLab / hisat-genotype

GNU General Public License v3.0
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Build Fails on MacOS 12.2.1 #66

Open aforsythe opened 2 years ago

aforsythe commented 2 years ago

I'm unable to build on MacOS 12.2.1. Getting numerous error: expected unqualified-id

Truncated output below.

In file included from hisat2_build_main.cpp:20:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/iostream:37:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/ios:214:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/__locale:18:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/mutex:199:
./version:1:1: error: expected unqualified-id
2.2.1
^
In file included from hisat2_build_main.cpp:20:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/iostream:38:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/istream:163:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/ostream:140:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/locale:205:
./version:1:1: error: expected unqualified-id
2.2.1
^
In file included from hisat2_build_main.cpp:20:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/iostream:38:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/istream:163:
In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/ostream:140:
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/c++/v1/locale:749:44: error: use of undeclared identifier '__error'
        typename remove_reference<decltype(errno)>::type __save_errno = errno;
                                           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/sys/errno.h:81:17: note: expanded from macro 'errno'
#define errno (*__error())
                ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
shwetha141 commented 2 months ago

error: expected unqualified-id

I have the same problem. Any work around for this?