Hisatgenotype is taking too much of time to run on samples

DaehwanKimLab / hisat-genotype

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Hisatgenotype is taking too much of time to run on samples #83

Open likhitha99 opened 1 month ago

likhitha99 commented 1 month ago

Hello,

Could you please provide a way to make the run faster? I'm trying to run a slurm job but it is taking more than 7 days to complete.

tkyscsb commented 1 month ago

Hi,

Have you tried the --threads-aprocess option? This option increases linear speed. For example, using "--threads-aprocess 8" reduced the time by 8x on my multi-core machine.