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DaehwanKimLab / hisat2

Graph-based alignment (Hierarchical Graph FM index)
GNU General Public License v3.0
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`flag > 0` for `const char * flag` #142

Closed BenLangmead closed 6 years ago

BenLangmead commented 7 years ago

This issue was fixed in Bowtie 2 by changing flag > 0 to *flag > 0 and it looks like the same change is needed in HISAT:

https://github.com/BenLangmead/bowtie2/issues/81

Best, Ben

infphilo commented 6 years ago

Thank you - the solution is incorporated into HISAT2's master branch.