hisat2-align died with signal 6 (ABRT)

DaehwanKimLab / hisat2

Graph-based alignment (Hierarchical Graph FM index)

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hisat2-align died with signal 6 (ABRT) #144

Open gianfilippo opened 6 years ago

gianfilippo commented 6 years ago

Hi,

I am having this issue with some older PE files, running HISAT2. I did read the older posts. It appears that the files have a different number of lines. Yet, I tried tophat2 and it mapped without problem. I understand I should sync the FASTQ files, yet, I was wondering why tophat2 can map them and HISAT2 complains. Are they not both using bowtie2 ?

Thanks