Output file is still generated when there is a error

DaehwanKimLab / hisat2

Graph-based alignment (Hierarchical Graph FM index)

GNU General Public License v3.0

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Output file is still generated when there is a error #177

Open hsiaoyi0504 opened 6 years ago

hsiaoyi0504 commented 6 years ago

When I run the hisat2, I got following error:

Error: Read SRR1865089.4340428 DHFC08P1:388:D1DFPACXX:3:1211:14103:20789 length=101 has more read characters than quality values.
terminate called after throwing an instance of 'int'
(ERR): hisat2-align died with signal 6 (ABRT) (core dumped)

However, the output file is still generated. Is it a expected behavior ?