DaehwanKimLab / hisat2

Graph-based alignment (Hierarchical Graph FM index)
GNU General Public License v3.0
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Can we combine paired and single reads in the same run? #259

Open StromTroopers opened 4 years ago

StromTroopers commented 4 years ago

Hello, the question is in the title.

I wondered if we could use option such as : hisat2 --dta -k 1 -q -x mapping_index -1 paired_read_2.fastq.gz -2 paired_read_2.fastq.gz -r single_read.fastq.gz