Hi,
I used to utilize the bismap software and Its equipped scripts such as methratio.py which give me CG, CHG, CHH sites. But this
scripts is not worked on hisat-3n alignment files. Is hisat-3n equipped with function? I try the hisat-3n-table command and the result need to further processing. Do you any suggestions?
Best wishes
Hi, I used to utilize the bismap software and Its equipped scripts such as methratio.py which give me CG, CHG, CHH sites. But this scripts is not worked on hisat-3n alignment files. Is hisat-3n equipped with function? I try the hisat-3n-table command and the result need to further processing. Do you any suggestions? Best wishes