hisat2-build error: Could not allocate space for a joined string

DaehwanKimLab / hisat2

Graph-based alignment (Hierarchical Graph FM index)

GNU General Public License v3.0

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hisat2-build error: Could not allocate space for a joined string #343

Open showteeth opened 2 years ago

showteeth commented 2 years ago

When build index with large genome, I got this message:

Could not allocate space for a joined string of 1074914909166 elements.
Switching to a packed string representation.
Total time for call to driver() for forward index: 04:09:33

Is this a fatal error? And are there any suggestions to avoid such errors?

xiaoyezao commented 2 years ago

Have you resolved this issue? I encountered the same problem with a 9.8G genome.