(ERR): hisat2-align died with signal 7 (BUS)

DaehwanKimLab / hisat2

Graph-based alignment (Hierarchical Graph FM index)

GNU General Public License v3.0

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(ERR): hisat2-align died with signal 7 (BUS) #373

Open sylphjh opened 2 years ago

sylphjh commented 2 years ago

I am running HISAT2 on Quest. From the test run, I got the error message as below. (ERR): hisat2-align died with signal 7 (BUS)

what is the reason for this? This is the command I used. hisat2 -x /1.Reference/mmul10 -U test.fq -S test.sam

Thanks for the help!!!

sylphjh commented 2 years ago

I think this is due to PATH issue. How can I set PATH for current HISAT2 on my linux? I kind of made a mess while I am trying to run Tri-galore because of cutadapt PATH setting. Please help me to fix or set PATH for HISAT2.