DaehwanKimLab / hisat2

Graph-based alignment (Hierarchical Graph FM index)
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Issue with aligning with hisat2 #394

Open alok1922 opened 1 year ago

alok1922 commented 1 year ago

Hii... i am running hisat2 with command hisat2 -p 10 --dta -x '/home/naren/Desktop/hisat2' -1 '/home/naren/Desktop/Galaxy9-[Trimmomatic_on_SO_5639_Repl_blood_fed_18hr_R1.fastq.gz].fastq' -2 '/home/naren/Desktop/Galaxy12-[Trimmomatic_on_SO_5639_Repl_blood_fed_18hr_R2.fastq.gz].fastq' -S SO_5639_Repl_blood_fed_18hr.sam
Error, fewer reads in file specified with -2 than in file specified with -1 Aborted (core dumped) (ERR): hisat2-align exited with value 134 and getting this error can any one help me with this