DaehwanKimLab / hisat2

Graph-based alignment (Hierarchical Graph FM index)
GNU General Public License v3.0
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Hisat2 [Errno 2] No such file or directory #405

Closed mmtohm closed 1 year ago

mmtohm commented 1 year ago

Hi, I ran hisat2 with this code

hisat2 -p 16 --dta -x index/piper_tran -1 trimmed.Rep1_20d_1_paired.fastq -2 trimmed.Rep1_20d_2_paired.fastq -s Rep1_20d.sam

on PBS script and error file show this

Warning: [Errno 2] No such file or directory: 'trimmed.Rep1_20d_1_paired.fastq' (ERR): Read file 'trimmed.Rep1_20d_1_paired.fastq' doesn't exist Exiting now ...

Someone help me pls