DaehwanKimLab / hisat2

Graph-based alignment (Hierarchical Graph FM index)
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error minimum intron length with hisat2 v. 2.2.1 #410

Open ConcettaDe4 opened 1 year ago

ConcettaDe4 commented 1 year ago

Hi!

I am using hisat2 v. 2.2.1 and I set the minimum intron size to 5. Unfortunately when I ran the command I got the following error:

--min-intronlen arg must be at least 20.

I was wondering how I can reduce the intron size.

Thanks for any help.

Concetta