DaehwanKimLab / tophat

Spliced read mapper for RNA-Seq
http://ccb.jhu.edu/software/tophat
Boost Software License 1.0
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Tophat forces bowtie -k and -m to be equal #39

Open brianpenghe opened 8 years ago

brianpenghe commented 8 years ago

By default tophat chooses 20 as -k and -m for bowtie. The -g option allows us to change the parameters but links -k and -m together. Can we unlink them? Say, -k 1 -m 20 ?

Thanks, Brian