No longer open the genome fasta in the GTFToFasta() and again in
make_transcriptome.
Remove genome_fhandle initializer and member as it is not used
anywhere else.
[This enables the following to work:
gtf_to_fasta <(gzip -dc Homo_sapiens.GRCh38.84.gtf.gz ) <( gzip -dc Homo_sapiens.GRCh38.dna.toplevel.fa.gz) gtf_fasta.fa which fails with the current version of gtf_to_fasta.]
No longer open the genome fasta in the GTFToFasta() and again in make_transcriptome.
Remove genome_fhandle initializer and member as it is not used anywhere else.
[This enables the following to work:
gtf_to_fasta <(gzip -dc Homo_sapiens.GRCh38.84.gtf.gz ) <( gzip -dc Homo_sapiens.GRCh38.dna.toplevel.fa.gz) gtf_fasta.fawhich fails with the current version of gtf_to_fasta.]