tophat-2.0.14 :: tophat-fusion-post bad samtools call

DaehwanKimLab / tophat

Spliced read mapper for RNA-Seq

http://ccb.jhu.edu/software/tophat

Boost Software License 1.0

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Open EricDeveaud opened 7 years ago

EricDeveaud commented 7 years ago

Hello,

samtools binary is installed as samtools_0.1.18

tophat-fusion-post calls samtools as samtools not samtools_0.1.18 on line 1220

1220  cmd = ['samtools', 'view', '-h', bam]

regards

Eric