DaleMoulding
commented
2 years ago Hi Javiro,
i've not had an email from Github? before, not sure if this will get back to you. You need to include the beginning of the macro also, to tell it the microscope type you want, and also before that to ask where your files are. The code you've included above won;t do anything without the first part. You'd also need to adjust the lines drawing the scale bars. If you wan't help with this you could contact me at work: @.*** I'm pretty busy but this should be simple to set up.
cheers
Dale
On Wed, Mar 2, 2022 at 2:58 PM Javiro94 @.***> wrote:
Hello! I am adapting the code that you have here. Really nice one. I make it simple, just with three maginications. So I have modified it. Instead of the microscopes, this one. The problem is that it doesnt work and it keeps showing error. I dont know what more to look at. if (Microscope=="Medium") {
run("Set Scale...", "distance="2474" known="1000" unit=um"); if (scalebar=="Yes") { run("Remove Overlay");// removes any previously added scalebar run("Scale Bar...", "width=x height=h font=f color="+colour+" background=None location=[Lower Right] bold "+showtext+" overlay"); } // save as either a new file with -scalebar added to the ned of the name, or with the same name as the original file. // put // at the start of the unwated save option. // saveAs("Tif", dir2+Imagename+"-scalebar");//saves the image to output folder with -scalebar added to the name save(savepath);//saves the image to output folder and over writes the original files if the input and output folder are the same
}
if (Microscope=="High") {
run("Set Scale...", "distance="619" known="100" unit=um"); if (scalebar=="Yes") { run("Remove Overlay");// removes any previously added scalebar run("Scale Bar...", "width=x height=h font=f color="+colour+" background=None location=[Lower Right] bold "+showtext+" overlay"); } // save as either a new file with -scalebar added to the ned of the name, or with the same name as the original file. // put // at the start of the unwated save option. // saveAs("Tif", dir2+Imagename+"-scalebar");//saves the image to output folder with -scalebar added to the name save(savepath);//saves the image to output folder and over writes the original files if the input and output folder are the same
}
if (Microscope=="Super High") {
run("Set Scale...", "distance="991" known="100" unit=um"); if (scalebar=="Yes") { run("Remove Overlay");// removes any previously added scalebar run("Scale Bar...", "width=x height=h font=f color="+colour+" background=None location=[Lower Right] bold "+showtext+" overlay"); } // save as either a new file with -scalebar added to the ned of the name, or with the same name as the original file. // put // at the start of the unwated save option. // saveAs("Tif", dir2+Imagename+"-scalebar");//saves the image to output folder with -scalebar added to the name save(savepath);//saves the image to output folder and over writes the original files if the input and output folder are the same
}
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Javiro94
Hello! I am adapting the code that you have here. Really nice one. I make it simple, just with three maginications. So I have modified it. Instead of the microscopes, this one. The problem is that it doesnt work and it keeps showing error. I dont know what more to look at. if (Microscope=="Medium") {
}
}
if (Microscope=="Super High") {
}