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DaliangNing / iCAMP1

Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
GNU General Public License v2.0
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issue with icamp.big #30

Closed phillwatts73 closed 1 year ago

phillwatts73 commented 1 year ago

Good afternoon, I installed iCAMP in R (v. 4.2.1 (2022-06-23) in LINUX) and tested the install with the example data. I am using Rstudio and connecting with a remote server. Everything works until step 9 (the iCAMP analysis) where I get the message

Error in checkForRemoteErrors(val) : 4 nodes produced errors; first error: there is no package called 'iCAMP'

The entire output to the console is:

All match very well. ----------Now binning-----------------Mon Jan 9 15:47:47 2023 Now computing path. begin at Mon Jan 9 15:47:48 2023. Please wait... Now computing path. begin at Mon Jan 9 15:47:49 2023. Please wait... Now computing dist to root. begin at Mon Jan 9 15:47:50 2023. Please wait... ----------Now binning com and sp without omitting small bins-----------------Mon Jan 9 15:47:50 2023 ----bMPD bin i=1 in 3 ---- Mon Jan 9 15:47:51 2023 Set of permutations < 'minperm'. Generating entire set. Now calculating observed betaMPD. Begin at Mon Jan 9 15:47:51 2023. Please wait... Now randomizing by parallel computing. Begin at Mon Jan 9 15:47:51 2023. Please wait... Error in checkForRemoteErrors(val) : 4 nodes produced errors; first error: there is no package called 'iCAMP'

I am using the example data and the example code as provided. Is there a known issue with the version of R that fails to find iCAMP? I have tried a reinstall (that gave the same error). I also tried using one core (still failed).

All help/insights gratefully received.

P

phillwatts73 commented 1 year ago

Problem sorted - was an issue with the system install.