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DaliangNing / iCAMP1

Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
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Dealing with dataset with four metacommunities #37

Closed adityabandla closed 1 year ago

adityabandla commented 1 year ago

Hi Ning,

How would you suggest using iCAMP to deal with a dataset comprising groups of samples from four different metacommunities? The group comparisons within each metacommunity is the same, just that I would like to treat the turnovers within each one separately and then compare them at the end. Thanks for your time

Regards, Adi

adityabandla commented 1 year ago

@DaliangNing I see this is already implemented in the function qpen.cm. Can a similar thing be implemented for icamp.big?

DaliangNing commented 1 year ago

Please use the function icamp.cm, which was included in iCAMP after version 1.5.2. icamp.cm example is in step 9.3.2 of iCAMP example code: https://github.com/DaliangNing/iCAMP1/blob/master/Examples/SimpleOTU/icamp.test.r The latest version (v 1.6.2) can be downloaded from GitHub: https://github.com/DaliangNing/iCAMP1/tree/master/RPackage/AllVersions