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DaliangNing / iCAMP1

Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
GNU General Public License v2.0
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The issue with step"binps=iCAMP::ps.bin" #46

Closed linxuanhuogatech closed 11 months ago

linxuanhuogatech commented 1 year ago

Hello Daliang, l followed the script, and when l ran this part : "binps=iCAMP::ps.bin(sp.bin = sp.bin,sp.ra = sp.ra, spname.use = spname.use, pd.desc = pd.big$pd.file, pd.spname = pd.big$tip.label, pd.wd = pd.big$pd.wd, nd.list = niche.dif$nd,nd.spname = nd.spname,ndbig.wd = niche.dif$nd.wd, cor.method = "kendall",r.cut = 0.1, p.cut = 0.05, min.spn = 10)

The error message is "Error in cor(as.vector(xdis), ydis, method = method, use = use) : missing observations in cov/cor"

How could i fix this?

DaliangNing commented 11 months ago

Looks like your environmental table may have missing data. Please send me (ningdaliang@ou.edu) your input files and R code to debug.

DaliangNing commented 11 months ago

I hope your problem has been solved. If no more questions, I will close this issue soon.