Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.
Is it possible, using the fastq mode, to use 2 fastq files as input (one for Read1, the other one for Read2, in paired-end sequencing)?
For example:
./umicollapse fastq -i input_R1.fastq input_R2.fastq -o output.fastq
Hi Daniel,
Is it possible, using the fastq mode, to use 2 fastq files as input (one for Read1, the other one for Read2, in paired-end sequencing)? For example: ./umicollapse fastq -i input_R1.fastq input_R2.fastq -o output.fastq
Thanks in advance!