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Daniel-Liu-c0deb0t / block-aligner

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
https://crates.io/crates/block_aligner
MIT License
124 stars 7 forks source link

Investigate performance regressions #15

Open Daniel-Liu-c0deb0t opened 2 years ago

Daniel-Liu-c0deb0t commented 2 years ago
  1. For some reason, the prefix scan benchmarks are slower than before. No major changes were made to it.
  2. Traceback is a lot slower after changes to make it more correct when tracing back gap open/extend.